PDBsum entry 5tcf

Pore analysis for: 5tcf calculated with

MOLE 2.0

PDB id

5tcf

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

12 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.61

2.28

25.3

-2.82

-0.71

29.6

85

4

3

2

1

0

2

0

2

2.38

2.40

28.0

-1.41

-0.15

27.2

82

3

2

1

3

0

0

0

3

1.72

2.23

37.6

-0.27

-0.14

19.1

84

2

3

1

4

0

0

0

4

2.27

2.45

40.0

-1.34

-0.35

25.2

92

3

4

2

4

0

0

0

5

2.37

2.52

41.6

-0.90

-0.37

10.8

76

4

2

5

4

2

0

0

6

1.75

1.77

67.9

-2.17

-0.65

22.9

88

6

5

4

3

0

2

0

7

1.40

1.40

87.9

-1.40

-0.30

26.4

84

8

5

1

9

1

2

0

8

1.57

1.70

89.3

-0.79

-0.33

15.6

87

5

8

6

10

1

3

0

9

1.82

1.84

92.0

-1.96

-0.45

30.3

89

10

6

1

7

0

0

0

10

1.32

2.93

119.8

-1.27

-0.52

18.3

91

4

8

5

13

0

2

0

11

1.13

1.92

170.1

-0.89

-0.32

19.2

86

9

11

5

20

1

3

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.