PDBsum entry 5t1v Go to PDB code:  Tunnel analysis for: 5t1v calculated with MOLE 2.0 PDB id 5t1v Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.22 18.8 0.57 -0.18 5.8 81 1 0 0 6 0 1 0   2 1.39 1.39 20.7 -0.81 -0.36 13.0 90 2 1 1 2 1 0 0   3 1.31 1.53 29.2 -0.17 -0.36 7.7 92 4 1 1 4 1 1 0   4 1.38 1.38 29.1 -0.98 -0.29 16.3 91 5 0 1 4 1 0 0   5 1.18 1.50 30.8 -0.77 -0.09 14.5 88 5 0 1 5 2 0 0   6 1.21 1.50 38.5 -0.59 -0.28 13.0 88 5 2 1 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.