spacer
spacer

PDBsum entry 5ssx

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 5ssx calculated with MOLE 2.0 PDB id
5ssx
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 2.14 18.9 -1.29 0.16 14.9 73 2 0 3 4 3 0 1  
2 1.35 2.14 19.5 -0.57 0.01 7.3 79 1 0 3 4 3 0 0  
3 1.35 2.15 21.4 -1.53 -0.22 12.6 81 1 1 4 3 2 0 0  
4 1.29 1.29 30.2 -0.89 -0.60 11.1 91 1 5 6 1 2 0 0  
5 1.38 1.56 25.0 -0.95 -0.07 14.2 81 3 1 2 2 1 1 0  
6 1.22 1.22 19.1 -1.18 -0.41 14.6 86 3 0 1 2 1 0 0  
7 1.13 1.13 19.8 -0.93 -0.37 12.8 83 3 2 2 3 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer