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PDBsum entry 5skc

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5skc calculated with MOLE 2.0 PDB id
5skc
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.11 1.76 27.0 1.43 0.74 3.2 81 1 0 4 7 5 0 0  KE6 803 B
2 1.43 2.15 31.0 -2.14 -0.34 29.8 76 6 4 2 3 1 0 0  
3 1.22 1.22 40.1 0.05 0.08 12.2 80 3 2 2 8 3 1 1  KE6 803 D
4 1.23 1.60 41.4 -0.43 -0.21 13.4 85 4 2 2 4 1 0 1  
5 3.41 4.64 41.6 -2.85 -0.44 34.3 79 12 2 2 3 1 2 0  
6 1.41 2.72 46.0 -1.28 -0.34 11.8 84 2 2 4 4 0 0 0  
7 1.43 2.84 49.1 -1.79 -0.53 18.8 87 2 4 4 3 0 0 0  
8 1.12 1.67 51.4 -0.85 0.21 16.4 78 5 1 4 6 4 1 0  KE6 803 A
9 2.38 2.96 104.3 -1.67 -0.60 20.6 82 6 5 5 3 0 2 1  
10 1.59 2.76 26.1 -1.13 -0.28 17.7 90 2 2 3 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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