 |
PDBsum entry 5ruh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5ruh calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5ruh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
9 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.83 |
2.09 |
22.5 |
-1.77 |
-0.60 |
8.4 |
91 |
|
2 |
1 |
5 |
1 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.95 |
2.11 |
24.0 |
-1.54 |
-0.53 |
10.9 |
85 |
3 |
2 |
6 |
2 |
1 |
0 |
0 |
|
|
3 |
 |
1.92 |
2.08 |
25.9 |
-1.39 |
-0.48 |
7.9 |
88 |
2 |
2 |
7 |
2 |
1 |
0 |
0 |
|
|
4 |
 |
1.95 |
2.18 |
26.5 |
-1.41 |
-0.41 |
4.6 |
87 |
0 |
2 |
7 |
2 |
2 |
0 |
1 |
|
|
5 |
 |
1.26 |
2.28 |
20.5 |
2.14 |
0.46 |
3.0 |
77 |
0 |
1 |
0 |
9 |
1 |
0 |
0 |
|
|
6 |
 |
1.26 |
2.24 |
21.4 |
2.25 |
0.47 |
1.2 |
76 |
0 |
0 |
0 |
9 |
1 |
0 |
0 |
|
 |
7 |
 |
1.26 |
2.25 |
27.8 |
1.95 |
0.37 |
1.4 |
80 |
0 |
0 |
1 |
11 |
2 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program