 |
PDBsum entry 5rfa
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5rfa calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5rfa
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
2 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.30 |
2.63 |
19.6 |
-1.73 |
-0.22 |
23.1 |
79 |
|
1 |
2 |
3 |
2 |
3 |
0 |
0 |
|
JGY 403 A
|
 |
|
2 |
 |
1.30 |
2.61 |
31.9 |
-1.30 |
-0.09 |
23.2 |
76 |
1 |
2 |
2 |
2 |
3 |
1 |
0 |
JGY 403 A
|
|
3 |
 |
2.04 |
2.23 |
15.3 |
-0.97 |
-0.19 |
8.6 |
91 |
1 |
0 |
3 |
2 |
0 |
0 |
1 |
|
 |
4 |
 |
2.10 |
2.18 |
15.5 |
-0.91 |
-0.14 |
8.0 |
91 |
1 |
0 |
3 |
2 |
0 |
0 |
1 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program