PDBsum entry 5ref Go to PDB code:  Tunnel analysis for: 5ref calculated with MOLE 2.0 PDB id 5ref Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.56 16.3 -0.44 0.01 11.2 73 1 1 1 1 3 1 0  DMS 402 A 2 1.21 1.68 17.2 -2.19 -0.50 19.0 84 1 2 3 0 2 0 0  DMS 402 A 3 1.20 1.69 20.7 -2.38 -0.64 17.2 86 1 2 4 1 2 0 0  DMS 402 A 4 1.18 2.45 21.4 -2.22 -0.52 20.5 80 1 2 4 1 4 0 0  DMS 402 A 5 1.18 2.48 24.9 -2.36 -0.62 19.1 82 1 2 5 2 4 0 0  DMS 402 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.