PDBsum entry 5oy4 Go to PDB code:  Tunnel analysis for: 5oy4 calculated with MOLE 2.0 PDB id 5oy4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.42 18.2 0.42 -0.15 4.0 77 1 0 0 5 2 0 0   2 1.35 1.41 24.2 -0.04 -0.05 6.6 74 1 1 2 5 3 1 0   3 1.36 3.43 21.6 0.02 -0.05 10.3 72 2 2 2 5 1 0 1  B4K 502 B 4 1.36 3.42 26.8 1.10 0.39 9.2 73 3 2 0 7 1 0 1  B4K 502 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.