PDBsum entry 5oge

Pore analysis for: 5oge calculated with

MOLE 2.0

PDB id

5oge

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

10 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.74

1.74

32.7

0.05

0.03

14.9

87

1

1

2

6

3

0

0

2

1.35

3.54

36.3

-1.16

0.12

2.4

70

0

0

4

4

4

1

0

3

1.65

1.64

37.2

0.04

-0.05

15.2

84

1

2

2

7

3

0

0

4

1.25

1.42

38.5

-0.21

-0.22

9.0

87

0

2

3

5

1

1

0

5

1.12

1.50

41.0

-0.03

0.00

11.0

83

1

1

2

8

4

1

0

6

2.27

3.60

55.6

-0.18

-0.04

4.4

71

1

0

6

5

5

0

0

OLC 401 E

7

1.18

1.41

34.2

-0.06

-0.08

7.7

78

1

0

3

5

3

1

0

8

1.20

1.44

72.4

-0.63

-0.28

12.8

80

3

2

7

6

4

0

1

9

2.44

3.52

32.3

2.12

0.84

1.8

70

1

0

1

6

5

1

1

10

1.58

1.88

31.8

0.10

-0.01

9.0

92

1

1

3

6

0

1

0

11

1.57

1.88

34.7

-0.36

-0.10

7.5

93

1

1

7

7

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.