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PDBsum entry 5odc
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Pore analysis for: 5odc calculated with  MOLE 2.0
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PDB id
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5odc
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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15 pores,
coloured by radius |
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21 pores,
coloured by radius
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21 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.66 |
2.96 |
61.7 |
-1.70 |
-0.30 |
25.4 |
80 |
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8 |
8 |
5 |
5 |
4 |
2 |
0 |
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GOL 304 B
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2 |
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1.93 |
2.11 |
65.3 |
-0.96 |
-0.17 |
15.8 |
84 |
5 |
6 |
4 |
8 |
2 |
3 |
0 |
GOL 712 G
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3 |
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1.80 |
1.94 |
67.4 |
-2.43 |
-0.63 |
29.1 |
83 |
9 |
10 |
6 |
3 |
1 |
1 |
0 |
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4 |
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1.54 |
1.68 |
69.9 |
-1.82 |
-0.44 |
26.6 |
80 |
7 |
6 |
1 |
4 |
1 |
0 |
0 |
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5 |
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2.15 |
2.35 |
77.1 |
-2.14 |
-0.52 |
24.6 |
83 |
6 |
6 |
4 |
3 |
2 |
3 |
0 |
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6 |
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2.21 |
2.20 |
78.7 |
-1.38 |
-0.25 |
23.7 |
78 |
6 |
6 |
0 |
7 |
2 |
2 |
0 |
GOL 712 G
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7 |
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1.56 |
1.70 |
81.2 |
-1.76 |
-0.37 |
20.9 |
80 |
9 |
9 |
5 |
6 |
2 |
2 |
0 |
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8 |
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1.19 |
1.36 |
81.8 |
-0.64 |
-0.10 |
13.1 |
77 |
9 |
2 |
4 |
6 |
3 |
2 |
5 |
9S8 302 H
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9 |
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1.64 |
1.81 |
90.9 |
-1.97 |
-0.52 |
19.1 |
83 |
12 |
11 |
13 |
6 |
2 |
6 |
0 |
ACT 703 A ACT 704 G
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10 |
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1.59 |
1.66 |
102.0 |
-1.54 |
-0.19 |
23.7 |
81 |
10 |
9 |
7 |
7 |
5 |
1 |
0 |
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11 |
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1.88 |
2.11 |
106.8 |
-2.12 |
-0.49 |
27.6 |
83 |
14 |
11 |
4 |
9 |
0 |
4 |
0 |
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12 |
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1.68 |
2.87 |
116.9 |
-2.43 |
-0.70 |
29.2 |
83 |
11 |
13 |
7 |
3 |
0 |
0 |
1 |
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13 |
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1.56 |
1.69 |
139.4 |
-1.21 |
-0.25 |
18.0 |
76 |
10 |
8 |
5 |
10 |
6 |
4 |
0 |
PE3 704 A GOL 712 G
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14 |
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1.85 |
2.01 |
157.5 |
-1.43 |
-0.32 |
20.5 |
79 |
14 |
14 |
7 |
12 |
4 |
6 |
0 |
PE3 704 A GOL 712 G
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15 |
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1.52 |
1.69 |
163.3 |
-1.66 |
-0.41 |
20.7 |
75 |
14 |
10 |
6 |
8 |
6 |
5 |
0 |
PE3 704 A
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16 |
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1.55 |
1.68 |
167.4 |
-1.68 |
-0.39 |
21.6 |
80 |
18 |
13 |
9 |
11 |
4 |
6 |
0 |
PE3 704 A
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17 |
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1.86 |
1.97 |
181.5 |
-1.73 |
-0.44 |
22.0 |
78 |
18 |
16 |
8 |
10 |
4 |
7 |
0 |
PE3 704 A
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18 |
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1.36 |
1.75 |
50.3 |
-0.09 |
0.02 |
11.3 |
80 |
4 |
2 |
4 |
5 |
0 |
3 |
4 |
SF4 302 K
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19 |
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1.23 |
1.38 |
51.7 |
-0.82 |
-0.12 |
14.5 |
79 |
6 |
3 |
4 |
5 |
2 |
2 |
4 |
SF4 302 K
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20 |
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1.12 |
1.33 |
35.8 |
-0.73 |
-0.15 |
10.0 |
89 |
4 |
2 |
5 |
5 |
1 |
2 |
0 |
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21 |
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1.19 |
3.31 |
43.8 |
1.13 |
0.33 |
14.4 |
76 |
4 |
4 |
0 |
12 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program