spacer
spacer

PDBsum entry 5o9c

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5o9c calculated with MOLE 2.0 PDB id
5o9c
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.12 2.14 29.0 1.73 0.54 1.2 68 0 0 0 6 4 1 0  
2 2.39 3.76 31.7 1.24 0.47 1.2 70 0 0 0 9 6 1 0  
3 1.42 1.82 44.5 0.45 0.41 2.1 71 0 1 2 8 8 0 0  
4 1.77 3.86 98.1 -0.66 0.00 17.7 76 5 7 3 9 5 1 0  
5 2.74 4.29 33.4 -1.86 -0.13 22.8 79 5 4 3 1 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer