PDBsum entry 5npy Go to PDB code:  Tunnel analysis for: 5npy calculated with MOLE 2.0 PDB id 5npy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.31 15.7 -0.95 -0.58 13.2 77 1 1 1 3 2 0 0   2 1.46 1.46 18.1 -2.74 -0.63 34.8 87 3 4 3 1 1 0 0   3 1.38 3.21 16.2 0.31 0.33 11.8 73 1 2 1 4 1 1 0   4 1.39 1.39 16.6 -0.70 -0.12 21.9 75 2 3 1 4 1 1 0   5 1.38 1.38 18.4 -0.82 -0.12 21.6 75 2 3 1 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.