PDBsum entry 5n2d Go to PDB code:  Tunnel analysis for: 5n2d calculated with MOLE 2.0 PDB id 5n2d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.79 2.08 19.1 -0.06 0.15 8.4 88 2 1 2 5 2 0 0  8J8 201 B 2 1.79 2.08 19.1 0.09 0.27 8.3 82 2 1 0 5 2 0 0  8J8 201 B 3 1.95 1.96 22.1 -0.31 -0.21 6.5 93 1 1 3 6 1 0 0  8J8 201 B 4 1.96 1.95 22.2 -0.12 -0.10 6.5 89 1 1 1 6 1 0 0  8J8 201 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.