PDBsum entry 5ml5 Go to PDB code:  Tunnel analysis for: 5ml5 calculated with MOLE 2.0 PDB id 5ml5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 2.26 17.3 -0.19 0.24 23.2 81 4 1 0 6 0 0 0  BOG 403 A 2 1.24 2.34 41.3 -0.14 0.15 16.2 80 4 3 1 8 2 0 0  BOG 403 A 1VI 404 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.