PDBsum entry 5mdh Go to PDB code:  Tunnel analysis for: 5mdh calculated with MOLE 2.0 PDB id 5mdh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.80 2.66 21.6 0.31 0.12 7.5 88 2 0 4 6 0 1 0  NAD 334 B MAK 335 B 2 1.55 1.58 23.9 -0.19 -0.02 11.5 88 2 1 4 6 0 1 0  NAD 334 B MAK 335 B 3 1.78 2.64 35.1 0.54 0.04 6.8 86 2 2 4 7 0 1 1  NAD 334 B MAK 335 B 4 1.37 1.37 17.8 -2.34 -0.76 20.9 88 4 2 5 0 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.