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PDBsum entry 5m0r
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 5m0r calculated with MOLE 2.0 PDB id
5m0r
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.41 4.16 35.4 -2.34 -0.48 28.5 85 6 3 4 2 1 0 0  
2 2.15 2.27 52.1 -1.57 -0.45 21.6 77 6 3 0 2 2 0 0  DC 12 Q DG 21 Q DC 3 R DC 4 R DG 5 R DG 6 R DG 1
S DC 2 S
3 2.86 2.86 63.5 -1.65 -0.42 18.3 80 6 3 6 4 3 0 0  
4 1.30 1.65 71.3 -0.60 -0.36 12.9 86 7 3 3 10 0 0 0  
5 3.01 3.09 85.2 -2.77 -0.70 31.6 86 9 5 6 1 1 0 0  
6 2.80 2.81 87.4 -2.39 -0.65 28.1 86 10 7 8 3 0 0 0  
7 1.30 1.72 91.0 -0.45 -0.03 16.0 76 7 8 6 14 7 0 0  
8 1.19 3.10 102.9 -0.83 -0.25 17.8 83 10 3 5 12 1 1 0  DT 20 Q DG 21 Q DC 3 R DC 4 R DG 5 R DG 6 R
9 1.23 2.63 106.9 -0.86 -0.15 17.5 80 9 4 5 10 3 1 0  DT 20 Q DG 1 S DC 2 S
10 1.20 1.55 116.6 -1.28 -0.28 20.2 81 12 9 10 12 5 0 0  
11 1.20 1.39 127.0 -1.63 -0.39 22.4 82 12 12 13 14 5 1 0  
12 1.41 1.57 141.0 -0.91 -0.15 17.2 82 13 9 11 20 6 0 0  
13 2.19 2.37 139.6 -1.67 -0.67 19.1 87 11 7 7 6 0 0 0  DC 2 Q DT 3 Q DG 13 Q DC 14 Q DG 21 Q DC 3 R DC 4
R DA 12 R DT 13 R DC 12 S DG 13 S DT 13 T
14 2.23 2.37 144.1 -1.30 -0.70 15.6 82 8 5 1 2 0 1 0  DC 5 Q DG 13 Q DC 14 Q DG 21 Q DC 3 R DC 4 R DT
13 R DC 14 R DT 15 R DC 16 R DG 17 R DC 18 R DA
19 R DC 22 R DG 23 R DA 24 R DA 32 R DA 12 T DT
13 T DC 14 T DT 15 T DC 16 T DG 17 T DA 19 T DG
17 U DG 18 U
15 2.77 3.31 151.4 -1.64 -0.64 18.8 83 10 8 5 5 2 0 0  DC 2 Q DT 3 Q DC 12 Q DG 13 Q DC 14 Q DC 4 R DG 5
R DG 6 R DA 12 R DT 13 R DG 1 S DC 2 S DC 12 S DG
13 S DT 13 T
16 2.73 2.82 160.9 -1.80 -0.61 22.6 77 7 6 0 1 2 1 0  DC 5 Q DG 6 Q DA 7 Q DT 10 Q DC 11 Q DC 12 Q DG 6
R DA 7 R DC 9 R DG 10 R DG 11 R DA 12 R DT 13 R
DC 14 R DT 15 R DC 16 R DG 17 R DC 18 R DA 19 R
DC 22 R DG 23 R DA 24 R DA 32 R DG 1 S DC 2 S DT
15 T DC 16 T DG 17 T DA 19 T DG 17 U DG 18 U
17 1.95 1.92 159.9 -1.89 -0.59 21.5 84 12 8 8 7 1 1 0  DT 10 Q DC 11 Q DC 12 Q DG 21 Q DC 3 R DC 4 R DG
5 R DG 6 R DA 7 R DC 9 R DG 10 R DG 11 R DA 12 R
18 1.61 1.78 177.7 -1.93 -0.56 24.0 80 12 12 7 6 2 2 0  DG 17 R DC 18 R DA 19 R DC 22 R DG 23 R DA 24 R D
A 27 R DC 28 R DA 32 R DC 18 T DA 19 T DC 22 T DG
17 U DG 18 U
19 2.82 2.87 182.2 -1.73 -0.67 20.4 85 11 9 7 6 0 1 0  DC 2 Q DT 3 Q DC 5 Q DA 12 R DT 13 R DC 14 R DT
15 R DC 16 R DG 17 R DC 18 R DA 19 R DC 22 R DG
23 R DA 24 R DA 32 R DC 12 S DG 13 S DT 13 T DC
14 T DT 15 T DC 16 T DG 17 T DA 19 T DG 17 U DG
18 U
20 1.44 1.93 193.7 -1.72 -0.63 20.5 80 12 13 8 6 2 1 0  DC 5 Q DG 13 Q DC 14 Q DG 21 Q DC 3 R DC 4 R DT
13 R DC 14 R DT 15 R DC 16 R DG 17 R DC 18 R DA
19 R DA 27 R DC 28 R DA 12 T DT 13 T DC 14 T DT
15 T DC 16 T DG 17 T DC 18 T DA 19 T DC 22 T
21 1.20 1.53 206.8 -1.15 -0.33 17.9 80 15 11 12 18 6 1 0  DT 10 Q DC 11 Q DC 12 Q DG 21 Q DC 3 R DC 4 R DG
5 R DG 6 R DA 7 R DC 9 R DG 10 R DG 11 R DA 12 R
22 1.98 1.99 206.7 -1.70 -0.53 18.9 80 10 9 8 6 4 3 0  DC 5 Q DG 6 Q DA 7 Q DG 10 R DG 11 R DA 12 R DT
13 R DC 14 R DT 15 R DC 16 R DG 17 R DC 18 R DA
19 R DC 22 R DG 23 R DA 24 R DA 32 R DT 15 T DC
16 T DG 17 T DA 19 T DG 17 U DG 18 U
23 1.18 1.49 211.0 -1.22 -0.31 18.3 81 14 14 17 23 7 2 0  DC 17 Q DG 18 Q
24 1.38 1.64 216.5 -1.94 -0.57 23.9 78 11 14 7 5 4 1 0  DC 5 Q DG 6 Q DA 7 Q DT 10 Q DC 11 Q DC 12 Q DG 6
R DA 7 R DC 9 R DG 10 R DG 11 R DA 12 R DT 13 R
DC 14 R DT 15 R DC 16 R DG 17 R DC 18 R DA 19 R D
A 27 R DC 28 R DG 1 S DC 2 S DT 15 T DC 16 T DG
17 T DC 18 T DA 19 T DC 22 T
25 1.30 1.63 214.7 -1.77 -0.56 22.7 83 12 13 12 9 1 1 0  DG 1 Q DC 2 Q DA 27 R DC 28 R DC 22 T DG 23 T DG
17 V DG 18 V DT 19 V
26 1.45 1.67 237.1 -1.52 -0.44 19.2 84 16 11 14 15 4 0 0  DC 2 Q DC 11 S DC 12 S DC 17 S DG 18 S DG 19 S DT
20 S DG 6 T
27 1.29 1.74 256.2 -1.90 -0.53 21.6 79 15 17 15 10 6 3 0  DC 5 Q DG 6 Q DA 7 Q DG 10 R DG 11 R DA 12 R DT
13 R DC 14 R DT 15 R DC 16 R DG 17 R DC 18 R DA
19 R DA 27 R DC 28 R DT 15 T DC 16 T DG 17 T DC
18 T DA 19 T DC 22 T
28 1.39 1.50 263.4 -1.83 -0.55 23.0 81 13 17 10 10 3 5 0  DG 17 R DC 18 R DA 19 R DC 22 R DG 23 R DA 24 R D
A 32 R DC 18 T DA 19 T DC 22 T DG 17 U DG 18 U
29 1.20 1.53 280.1 -1.27 -0.36 18.2 81 21 17 22 22 11 1 0  DC 2 Q DA 7 S DG 8 S DA 9 S DT 10 S DC 11 S DG 6
T DA 7 T DC 9 T DT 13 T
30 1.19 1.42 376.6 -1.29 -0.37 17.5 81 26 18 24 31 10 2 0  DG 10 R DG 11 R DA 12 R DC 12 S DG 13 S DC 17 S
DG 18 S DG 19 S DT 20 S DG 6 T DT 13 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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