PDBsum entry 5lpy Go to PDB code:  Tunnel analysis for: 5lpy calculated with MOLE 2.0 PDB id 5lpy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 2.37 25.2 0.45 0.18 8.6 77 2 3 3 5 3 0 0  ATP 1200 A 2 1.27 1.53 25.7 0.44 0.17 8.6 77 2 3 3 5 3 0 0  ATP 1200 A 3 1.25 2.38 26.0 0.71 0.32 10.2 80 2 3 3 6 3 1 0  ATP 1200 A 4 1.27 1.53 26.5 0.72 0.32 10.1 80 2 3 3 6 2 1 0  ATP 1200 A 5 1.29 1.86 17.4 0.07 0.41 13.8 70 4 0 1 5 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.