PDBsum entry 5l5h Go to PDB code:  Tunnel analysis for: 5l5h calculated with MOLE 2.0 PDB id 5l5h Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   69 tunnels, coloured by tunnel radius 71 tunnels, coloured by tunnel radius 71 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.44 75.3 -0.47 -0.17 11.4 82 6 2 5 9 7 1 2   2 1.36 1.44 75.5 -0.63 -0.21 12.7 81 7 3 6 7 7 1 2   3 1.22 1.43 108.6 -1.13 -0.26 12.1 85 8 6 13 10 8 1 1  39V 301 K 4 1.25 1.42 109.7 -1.16 -0.24 11.9 83 8 6 13 11 10 1 1  39V 301 Y MES 302 Y 5 1.21 1.43 120.9 -1.10 -0.31 11.2 85 9 6 15 11 8 1 1  39V 301 K 6 1.22 1.44 121.9 -1.28 -0.31 12.2 84 9 7 15 10 10 1 1  39V 301 Y MES 302 Y 7 1.23 1.45 138.1 -2.08 -0.31 23.7 82 12 6 11 8 8 1 0   8 1.21 1.42 138.7 -1.95 -0.28 22.8 81 12 5 11 9 8 1 0   9 1.22 1.44 140.0 -1.51 -0.20 17.2 81 9 5 16 7 10 0 1   10 1.24 1.44 141.4 -1.61 -0.20 17.6 81 9 6 16 6 10 0 1   11 1.26 1.44 141.3 -1.52 -0.24 17.4 82 13 6 13 9 10 0 1   12 1.25 1.44 142.0 -1.78 -0.31 19.2 83 9 5 14 7 10 0 0   13 1.22 1.44 142.0 -1.70 -0.26 18.9 83 9 4 14 8 10 0 0   14 1.24 1.46 145.1 -1.37 -0.20 16.4 82 12 5 12 10 10 0 1   15 1.22 1.44 145.6 -1.89 -0.33 19.7 85 11 4 15 7 8 0 0   16 1.26 1.46 147.6 -2.12 -0.35 24.4 83 16 7 13 6 10 1 0   17 1.24 1.45 148.7 -2.00 -0.35 20.6 85 11 6 16 6 9 0 0   18 1.24 1.21 150.9 -1.25 -0.24 15.5 83 10 4 15 9 9 1 0   19 1.23 1.44 151.6 -1.83 -0.34 19.3 85 12 7 14 7 8 0 0   20 1.23 1.44 150.2 -1.93 -0.35 22.5 84 17 6 13 8 9 1 0   21 1.27 1.46 152.0 -1.93 -0.36 20.0 85 11 8 15 6 8 0 0   22 1.23 1.44 151.6 -1.12 -0.21 14.6 83 10 3 15 10 9 1 0   23 1.27 1.42 152.1 -1.82 -0.28 20.8 81 13 9 15 10 9 1 0   24 1.18 1.31 153.6 -1.65 -0.41 18.7 84 11 6 13 6 7 0 0   25 1.23 1.46 152.6 -1.98 -0.36 21.5 82 14 5 12 9 8 1 0   26 1.20 1.34 154.5 -1.57 -0.39 18.3 84 11 6 13 7 7 0 0   27 1.26 1.45 153.1 -2.07 -0.38 21.5 82 14 6 12 8 8 1 0   28 1.29 1.45 154.5 -1.70 -0.31 16.8 82 11 6 17 6 10 0 1   29 1.24 1.44 154.5 -1.95 -0.36 21.6 82 12 8 11 5 9 0 0   30 1.26 1.45 155.9 -1.83 -0.29 20.8 83 13 8 14 8 11 0 0   31 1.24 1.46 154.9 -1.90 -0.34 20.5 80 15 8 11 6 12 0 0   32 1.25 1.45 155.9 -1.64 -0.26 16.2 82 11 5 17 7 10 0 1   33 1.25 1.45 155.3 -1.75 -0.29 19.8 82 13 7 15 10 9 1 0   34 1.23 1.46 154.7 -1.73 -0.27 19.8 83 13 7 14 9 11 0 0   35 1.33 1.40 157.1 -1.47 -0.27 19.1 83 12 9 14 10 10 0 0   36 1.26 1.45 155.5 -1.72 -0.24 18.1 83 14 7 13 8 10 0 0   37 1.27 1.45 155.9 -1.50 -0.29 15.9 83 14 5 14 10 10 0 1   38 1.26 1.44 156.5 -1.75 -0.35 17.6 84 11 4 15 8 10 0 0   39 1.28 1.45 156.5 -1.81 -0.37 17.8 84 11 5 14 7 10 0 0   40 1.28 1.45 157.2 -1.73 -0.24 18.9 84 11 8 13 7 8 0 0   41 1.25 1.46 157.4 -1.38 -0.21 16.6 83 15 3 11 10 10 0 0   42 1.27 1.44 159.6 -1.28 -0.14 15.1 79 11 6 14 12 10 3 0   43 1.26 1.44 161.8 -1.29 -0.20 16.7 81 14 5 13 13 9 1 0   44 1.27 1.44 160.1 -1.99 -0.42 19.0 86 13 5 15 6 8 0 0   45 1.32 1.44 159.6 -1.52 -0.29 16.3 82 14 6 13 9 10 0 1   46 1.25 1.13 161.9 -1.34 -0.21 16.6 80 13 6 13 13 9 1 0   47 1.26 1.44 162.1 -2.03 -0.40 21.8 84 18 6 14 7 10 1 0   48 1.32 1.44 164.5 -1.53 -0.29 16.0 84 14 6 14 10 9 1 0   49 1.25 1.46 163.2 -1.98 -0.41 18.8 85 13 5 17 7 9 0 0   50 1.33 1.39 164.8 -1.63 -0.30 17.0 84 14 6 14 9 9 1 0   51 1.29 1.43 164.6 -2.07 -0.44 22.0 84 18 7 13 7 9 1 0   52 1.24 1.23 165.4 -1.31 -0.30 14.3 84 12 3 16 10 9 1 0   53 1.29 1.43 166.7 -1.77 -0.32 19.0 82 15 8 16 11 9 1 0   54 1.27 1.43 166.5 -1.83 -0.38 18.1 85 13 7 15 7 8 0 0   55 1.29 1.43 166.0 -1.36 -0.31 14.7 83 12 4 16 9 9 1 0   56 1.29 1.43 166.1 -1.91 -0.42 18.2 85 13 8 15 6 8 0 0   57 1.21 1.35 169.0 -1.70 -0.46 17.4 85 13 7 14 6 7 0 0   58 1.33 1.42 169.8 -1.87 -0.37 19.0 82 15 9 16 9 9 1 0   59 1.29 1.42 169.2 -1.84 -0.36 18.9 84 15 8 15 8 11 0 0   60 1.25 1.45 169.1 -1.95 -0.42 20.0 83 14 7 12 6 9 0 0   61 1.29 1.42 169.4 -2.06 -0.44 19.9 81 17 9 12 5 12 0 0   62 1.28 1.46 170.4 -1.78 -0.34 18.9 84 15 7 15 9 11 0 0   63 1.33 1.42 171.7 -1.47 -0.32 17.5 84 14 8 15 11 10 0 0   64 1.33 1.42 170.0 -1.86 -0.33 17.7 83 16 8 14 7 10 0 0   65 1.30 1.46 171.7 -1.77 -0.33 17.4 85 13 7 14 7 8 0 0   66 1.20 1.27 176.3 -1.38 -0.26 16.0 82 15 6 15 12 9 1 0   67 1.30 1.32 176.4 -1.32 -0.25 15.4 81 15 5 14 14 9 1 0   68 1.23 1.83 24.3 -0.57 0.17 5.9 80 0 2 4 3 3 1 0   69 1.22 1.89 20.0 -0.28 0.02 2.9 91 1 0 4 2 1 1 0   70 1.58 1.65 16.6 -2.32 -0.18 34.3 78 3 4 0 1 2 0 0   71 1.60 1.67 16.3 -2.28 -0.20 34.3 78 3 4 0 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.