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PDBsum entry 5kmh
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Pore analysis for: 5kmh calculated with  MOLE 2.0
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PDB id
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5kmh
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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5 pores,
coloured by radius |
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14 pores,
coloured by radius
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14 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.62 |
2.75 |
27.0 |
-0.71 |
0.13 |
18.8 |
71 |
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2 |
2 |
1 |
4 |
4 |
0 |
0 |
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PX6 1301 C
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2 |
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2.16 |
3.63 |
41.1 |
1.04 |
0.03 |
3.7 |
84 |
0 |
7 |
0 |
16 |
2 |
0 |
0 |
CA 1301 A CA 1302 A 6U8 1302 C CA 1301 D
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3 |
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2.06 |
3.01 |
41.9 |
0.94 |
-0.01 |
3.4 |
82 |
0 |
7 |
0 |
16 |
4 |
0 |
0 |
CA 1301 A CA 1302 A 6U8 1302 C CA 1301 D
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4 |
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2.06 |
2.94 |
42.2 |
1.97 |
0.63 |
1.0 |
83 |
0 |
0 |
0 |
15 |
6 |
0 |
0 |
6U8 1302 C
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5 |
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1.48 |
2.15 |
43.5 |
3.14 |
1.13 |
0.7 |
78 |
1 |
0 |
0 |
14 |
5 |
1 |
0 |
MC3 1302 D
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6 |
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2.16 |
3.61 |
44.8 |
2.76 |
1.02 |
0.7 |
87 |
0 |
0 |
0 |
18 |
4 |
0 |
0 |
6U8 1302 C
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7 |
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2.06 |
3.05 |
46.5 |
1.82 |
0.58 |
1.1 |
83 |
0 |
0 |
0 |
16 |
6 |
0 |
0 |
6U8 1302 C
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8 |
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1.51 |
1.54 |
50.4 |
0.74 |
0.20 |
5.5 |
69 |
3 |
0 |
3 |
7 |
6 |
2 |
0 |
PX6 1303 D
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9 |
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2.13 |
3.45 |
57.5 |
1.09 |
0.13 |
3.2 |
77 |
0 |
7 |
0 |
17 |
5 |
1 |
0 |
CA 1301 A CA 1302 A 6U8 1302 C CA 1301 D MC3 1302
D
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10 |
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2.28 |
2.75 |
88.4 |
2.13 |
0.85 |
0.8 |
72 |
0 |
0 |
2 |
18 |
8 |
2 |
0 |
PX6 1303 D
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11 |
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2.07 |
2.89 |
89.3 |
0.86 |
0.15 |
6.7 |
73 |
0 |
9 |
0 |
24 |
7 |
2 |
0 |
CA 1301 A CA 1302 A PX6 1305 A 6U8 1302 C CA 1301
D
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12 |
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2.16 |
3.52 |
93.2 |
2.17 |
0.88 |
0.9 |
76 |
0 |
0 |
0 |
24 |
9 |
2 |
0 |
PX6 1305 A 6U8 1302 C
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13 |
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2.19 |
2.99 |
97.2 |
2.35 |
0.87 |
0.8 |
77 |
0 |
0 |
0 |
29 |
11 |
2 |
0 |
PX6 1305 A 6U8 1302 C
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14 |
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2.14 |
3.44 |
108.8 |
2.10 |
0.90 |
0.9 |
75 |
0 |
0 |
0 |
26 |
12 |
3 |
0 |
PX6 1305 A 6U8 1302 C MC3 1302 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program