PDBsum entry 5kl1 Go to PDB code:  Tunnel analysis for: 5kl1 calculated with MOLE 2.0 PDB id 5kl1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.64 30.2 1.41 0.53 7.6 90 5 2 3 16 0 0 0   2 1.13 1.36 30.5 1.98 0.69 5.5 88 5 1 0 20 0 0 1   3 1.24 2.55 37.0 1.65 0.54 9.6 85 4 4 4 13 0 0 1   4 1.48 1.64 20.8 1.88 0.56 7.0 88 2 1 0 9 1 2 0   5 1.38 2.18 34.1 3.05 0.92 1.5 77 1 0 0 14 1 2 2   6 1.37 1.59 39.9 2.79 0.93 2.2 80 2 1 0 18 2 2 2   7 1.20 1.40 22.5 -0.38 -0.16 13.2 75 1 1 4 4 3 0 0  A 12 C 8 1.24 1.41 24.6 0.31 0.06 8.3 78 3 0 5 5 6 1 0  A 12 C 9 1.18 1.43 17.3 -0.52 -0.19 15.6 78 3 1 1 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.