PDBsum entry 5kjd Go to PDB code:  Pore analysis for: 5kjd calculated with MOLE 2.0 PDB id 5kjd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.89 28.9 -1.79 -0.41 23.3 80 4 3 3 3 1 0 0   2 3.21 4.54 30.9 -2.44 -0.59 20.1 74 7 3 3 1 1 3 0   3 2.07 2.24 46.9 0.22 0.03 5.8 75 2 2 3 6 7 1 0   4 1.50 1.61 54.8 0.23 0.16 9.6 77 2 3 4 8 4 1 0   5 2.10 2.29 59.7 -0.59 -0.15 13.1 74 4 3 3 7 7 1 0   6 2.08 2.18 61.4 0.19 -0.01 5.8 77 2 1 4 7 5 3 0   7 1.43 1.72 138.8 -0.92 -0.32 13.6 77 11 8 6 8 7 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.