PDBsum entry 5kdd Go to PDB code:  Tunnel analysis for: 5kdd calculated with MOLE 2.0 PDB id 5kdd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.64 1.87 18.1 -0.97 -0.12 15.2 84 1 2 4 4 2 0 0   2 1.18 2.97 19.1 1.47 0.30 7.3 76 0 1 0 7 1 1 0   3 1.15 3.21 20.2 1.52 0.29 7.5 73 0 1 0 8 0 1 0   4 1.07 1.33 20.5 1.09 0.23 10.6 75 2 1 0 7 1 0 0   5 1.21 2.81 23.6 2.16 0.59 4.2 75 1 1 0 9 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.