PDBsum entry 5kbj Go to PDB code:  Pore analysis for: 5kbj calculated with MOLE 2.0 PDB id 5kbj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.60 2.70 48.3 -2.22 -0.45 24.6 79 6 5 9 1 4 0 0   2 1.34 2.91 51.1 -3.06 -0.61 33.1 82 6 6 6 1 3 0 0   3 1.56 1.65 52.8 -2.52 -0.55 31.7 80 6 7 4 3 2 0 0   4 1.37 1.37 57.2 -1.47 -0.67 14.7 88 3 2 2 1 0 0 0  DG 8 R DA 9 R DA 10 R DG 11 R DT 12 R DT 13 R DT 20 R DC 21 R DT 19 W DT 20 W 5 1.56 1.68 58.3 -2.74 -0.60 22.7 80 8 6 8 4 4 0 0   6 1.35 2.79 58.9 -3.18 -0.62 26.8 82 8 5 11 2 5 0 0   7 1.23 1.34 66.5 -2.73 -0.67 27.4 89 4 4 5 1 1 0 0   8 1.46 1.45 68.1 -2.43 -0.63 24.2 81 8 10 9 2 3 1 0   9 1.37 1.36 79.5 -1.86 -0.35 21.5 76 5 4 4 2 4 1 0   10 1.22 1.68 81.9 -1.76 -0.52 20.1 83 8 6 5 4 4 0 0  DA 19 R DT 20 R DC 21 R DT 20 W DC 21 W 11 1.23 1.60 83.5 -1.95 -0.63 20.6 83 8 8 6 3 3 0 0  DA 19 R DT 20 R DT 20 W DC 21 W 12 1.56 1.81 120.9 -2.05 -0.60 21.3 82 11 8 8 1 1 2 0  DT 20 R DC 21 R DA 32 R DT 33 R DT 20 W 13 1.54 1.74 192.5 -2.05 -0.67 21.6 84 14 15 15 2 3 0 0  DA 18 R DA 19 R DT 20 R DC 28 R DC 29 R DT 13 W DT 20 W DC 21 W DG 22 W Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.