PDBsum entry 5kak Go to PDB code:  Tunnel analysis for: 5kak calculated with MOLE 2.0 PDB id 5kak Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 3.73 24.7 -1.96 0.16 19.4 72 5 2 3 4 4 0 0   2 1.40 3.78 26.4 -1.70 0.25 18.2 71 4 1 4 4 4 0 0   3 1.33 1.38 50.2 -1.10 0.03 21.0 74 5 6 2 10 5 0 0   4 1.27 1.55 19.6 -2.43 0.07 22.9 69 3 1 3 3 3 0 0   5 1.38 3.81 23.9 -2.03 0.16 20.7 67 4 2 3 2 5 0 0  EDO 201 H 6 1.16 1.73 25.4 -2.23 0.09 22.1 68 4 2 3 2 4 0 0  EDO 201 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.