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PDBsum entry 5kaf
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Pore analysis for: 5kaf calculated with  MOLE 2.0
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PDB id
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5kaf
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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12 pores,
coloured by radius |
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30 pores,
coloured by radius
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30 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.10 |
2.50 |
38.5 |
-1.90 |
-0.36 |
22.5 |
76 |
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6 |
2 |
3 |
3 |
3 |
3 |
0 |
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DGD 517 C LMG 519 C HEC 201 V
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2 |
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2.03 |
2.03 |
51.4 |
-1.79 |
-0.61 |
18.6 |
79 |
6 |
2 |
3 |
1 |
1 |
0 |
0 |
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3 |
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2.36 |
3.65 |
82.3 |
1.65 |
0.76 |
3.1 |
75 |
2 |
0 |
4 |
21 |
10 |
2 |
0 |
CLA 502 C CLA 504 C CLA 508 C CLA 509 C CLA 510 C
CLA 511 C DGD 517 C DGD 518 C LMG 519 C BCR 101 K
BCR 101 Y
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4 |
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2.02 |
3.31 |
85.0 |
-1.52 |
-0.34 |
16.5 |
82 |
6 |
5 |
6 |
5 |
2 |
3 |
1 |
HEC 201 V
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5 |
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1.42 |
1.45 |
86.5 |
1.06 |
0.40 |
6.6 |
79 |
5 |
3 |
4 |
21 |
6 |
1 |
0 |
CLA 508 C CLA 509 C CLA 510 C CLA 511 C BCR 101 K
BCR 101 Y
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6 |
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1.38 |
1.43 |
86.2 |
0.23 |
0.41 |
10.4 |
75 |
6 |
1 |
5 |
11 |
7 |
1 |
0 |
CLA 502 C CLA 504 C CLA 508 C CLA 509 C CLA 510 C
DGD 517 C DGD 518 C LMG 519 C
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7 |
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1.44 |
1.43 |
91.2 |
1.44 |
0.52 |
4.8 |
81 |
5 |
1 |
4 |
25 |
7 |
1 |
0 |
CLA 508 C CLA 509 C CLA 510 C CLA 511 C BCR 101 K
BCR 101 Y
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8 |
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1.40 |
1.45 |
91.4 |
-0.10 |
0.25 |
12.1 |
76 |
7 |
3 |
5 |
11 |
7 |
1 |
0 |
CLA 502 C CLA 504 C CLA 508 C CLA 509 C CLA 510 C
DGD 517 C DGD 518 C LMG 519 C
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9 |
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1.26 |
2.09 |
106.6 |
-2.00 |
-0.43 |
20.4 |
81 |
9 |
6 |
9 |
7 |
4 |
2 |
0 |
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10 |
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1.16 |
2.62 |
112.4 |
-1.59 |
-0.35 |
18.5 |
82 |
11 |
6 |
8 |
8 |
3 |
3 |
1 |
DGD 517 C DGD 518 C LMG 519 C HEC 201 V
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11 |
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1.43 |
3.31 |
133.1 |
0.74 |
0.73 |
10.3 |
72 |
6 |
2 |
2 |
18 |
16 |
0 |
0 |
SQD 603 A CLA 607 A PL9 611 A LHG 617 A LHG 618 A
CLA 504 C CLA 508 C CLA 510 C DGD 517 C DGD 518 C
PHO 401 D CLA 402 D BCR 404 D LMG 405 D HEM 101 E
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12 |
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1.98 |
2.21 |
154.5 |
1.50 |
0.89 |
5.1 |
69 |
5 |
0 |
3 |
21 |
20 |
2 |
0 |
CLA 607 A PL9 611 A LHG 618 A CLA 504 C CLA 508 C
DGD 517 C DGD 518 C LMG 519 C PHO 401 D CLA 402 D
BCR 404 D LMG 405 D HEM 101 E
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13 |
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3.09 |
3.24 |
152.0 |
0.76 |
0.43 |
10.8 |
75 |
9 |
5 |
2 |
25 |
12 |
1 |
1 |
FME 1 M FME 1 T BCR 101 T LHG 613 a UNL 602 b UNL
603 b CLA 605 b CLA 606 b CLA 607 b CLA 608 b CLA
609 b CLA 610 b CLA 611 b CLA 612 b CLA 613 b CLA
614 b CLA 615 b CLA 616 b CLA 617 b BCR 620 b BCR
621 b LMG 623 b LMG 625 b UNL 402 d CLA 404 d BCR
405 d LMG 409 d SQD 101 f BCR 101 h LHG 101 l
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14 |
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1.61 |
2.73 |
155.8 |
0.43 |
0.44 |
6.9 |
79 |
7 |
1 |
9 |
21 |
12 |
1 |
0 |
PL9 611 A CLA 608 B CLA 403 D BCR 404 D SQD 409 D
HEM 101 E DGD 103 H
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15 |
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2.29 |
4.36 |
165.5 |
0.20 |
0.10 |
11.6 |
79 |
5 |
9 |
6 |
29 |
8 |
1 |
0 |
UNL 624 B FME 1 M FME 1 T CLA 609 a BCR 610 a UNL
602 b UNL 603 b LMG 502 c CLA 503 c CLA 505 c CLA
507 c CLA 508 c CLA 509 c CLA 511 c CLA 514 c CLA
515 c BCR 516 c BCR 517 c DGD 518 c UNL 101 i FME
1 m
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16 |
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1.40 |
1.43 |
177.6 |
-0.45 |
-0.13 |
12.3 |
77 |
8 |
9 |
5 |
16 |
8 |
2 |
0 |
CLA 609 A LMG 612 A CLA 501 C CLA 505 C CLA 506 C
CLA 507 C CLA 509 C BCR 515 C DGD 516 C
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17 |
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1.94 |
2.91 |
181.9 |
0.12 |
0.23 |
11.7 |
78 |
9 |
6 |
4 |
22 |
10 |
2 |
0 |
CLA 609 A LMG 612 A CLA 501 C CLA 502 C CLA 503 C
CLA 504 C CLA 505 C CLA 506 C CLA 507 C CLA 508 C
CLA 509 C CLA 510 C BCR 515 C DGD 516 C DGD 517 C
DGD 518 C LMG 519 C
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18 |
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2.44 |
2.75 |
189.6 |
-0.57 |
-0.02 |
12.4 |
84 |
9 |
9 |
14 |
23 |
9 |
1 |
0 |
LHG 616 A CLA 602 B CLA 603 B CLA 604 B CLA 605 B
CLA 606 B CLA 607 B CLA 610 B CLA 611 B CLA 612 B
CLA 613 B CLA 614 B BCR 617 B BCR 618 B LMG 620 B
BCR 627 B DGD 103 H LHG 101 L FME 1 M FME 1 T UNL
602 b UNL 603 b FME 1 m FME 1 t UNL 101 t
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19 |
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1.73 |
2.91 |
197.1 |
0.41 |
0.43 |
7.3 |
73 |
7 |
3 |
10 |
28 |
23 |
1 |
0 |
SQD 603 A CLA 607 A PL9 611 A LHG 617 A LHG 618 A
CLA 608 B CLA 609 B CLA 504 C CLA 508 C CLA 510 C
DGD 517 C DGD 518 C PHO 401 D CLA 402 D CLA 403 D
BCR 404 D LMG 405 D SQD 409 D DGD 103 H
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20 |
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2.24 |
4.30 |
195.0 |
0.09 |
0.20 |
11.8 |
78 |
8 |
9 |
8 |
32 |
12 |
2 |
0 |
UNL 624 B FME 1 M FME 1 T CLA 609 a BCR 610 a UNL
602 b UNL 603 b LMG 502 c CLA 503 c CLA 504 c CLA
505 c CLA 506 c CLA 507 c CLA 508 c CLA 509 c CLA
511 c CLA 512 c BCR 517 c DGD 518 c DGD 519 c LMG
521 c UNL 101 i UNL 101 j FME 1 m
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21 |
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2.08 |
3.42 |
197.8 |
0.80 |
0.36 |
8.8 |
80 |
7 |
6 |
4 |
35 |
9 |
3 |
0 |
CLA 609 A LMG 612 A CLA 501 C CLA 502 C CLA 503 C
CLA 505 C CLA 506 C CLA 507 C CLA 508 C CLA 509 C
CLA 510 C CLA 511 C BCR 515 C DGD 516 C BCR 101 K
BCR 101 Y
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22 |
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1.56 |
1.59 |
222.1 |
1.48 |
0.71 |
7.1 |
75 |
12 |
2 |
5 |
43 |
20 |
1 |
1 |
CLA 609 A BCR 610 A LMG 612 A LMG 613 A SQD 619 A
CLA 501 C CLA 505 C CLA 506 C CLA 507 C CLA 509 C
BCR 515 C DGD 516 C SQD 101 I BCR 101 T LHG 613 a
SQD 601 b CLA 605 b CLA 606 b CLA 607 b CLA 608 b
CLA 609 b CLA 610 b CLA 611 b CLA 612 b CLA 613 b
CLA 614 b CLA 615 b CLA 616 b CLA 617 b BCR 620 b
BCR 621 b LMG 623 b LMG 625 b UNL 402 d CLA 404 d
BCR 405 d LMG 409 d SQD 101 f BCR 101 h LHG 101 l
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23 |
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1.90 |
2.03 |
229.4 |
1.41 |
0.66 |
7.4 |
76 |
7 |
5 |
5 |
42 |
23 |
3 |
0 |
CLA 606 A CLA 607 A PHO 608 A PL9 611 A LMG 613 A
CLA 615 A LHG 618 A DGD 518 C PHO 401 D CLA 402 D
BCR 404 D LMG 405 D LHG 406 D PL9 407 D HEM 101 E
LHG 101 L FME 1 M FME 1 T BCR 101 T SQD 601 b UNL
602 b UNL 603 b CLA 610 b CLA 617 b BCR 620 b BCR
621 b LMG 623 b
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24 |
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1.37 |
1.38 |
233.4 |
-1.25 |
-0.25 |
17.1 |
80 |
11 |
13 |
14 |
16 |
10 |
4 |
0 |
CLA 609 A LMG 612 A CLA 501 C CLA 505 C CLA 506 C
CLA 507 C CLA 509 C BCR 515 C DGD 516 C
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25 |
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2.40 |
4.40 |
235.1 |
1.88 |
0.82 |
4.8 |
74 |
11 |
0 |
6 |
48 |
28 |
2 |
1 |
CLA 606 A CLA 607 A PHO 608 A LMG 613 A CLA 615 A
CLA 504 C CLA 508 C DGD 517 C DGD 518 C LMG 519 C
PHO 401 D CLA 402 D BCR 404 D LMG 405 D LHG 406 D
PL9 407 D LHG 101 L BCR 101 T LHG 613 a SQD 601 b
CLA 605 b CLA 606 b CLA 607 b CLA 608 b CLA 609 b
CLA 610 b CLA 611 b CLA 612 b CLA 613 b CLA 614 b
CLA 615 b CLA 616 b CLA 617 b BCR 620 b BCR 621 b
LMG 623 b LMG 625 b UNL 402 d CLA 404 d BCR 405 d
LMG 409 d SQD 101 f BCR 101 h LHG 101 l
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26 |
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1.75 |
3.86 |
250.4 |
-1.10 |
-0.40 |
16.0 |
80 |
10 |
20 |
10 |
16 |
6 |
4 |
1 |
FME 1 M FME 1 T BCR 610 a UNL 602 b UNL 603 b LMG
502 c FME 1 i FME 1 m HEC 201 v
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27 |
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2.14 |
4.49 |
246.5 |
1.91 |
0.80 |
4.2 |
75 |
9 |
0 |
6 |
55 |
28 |
4 |
0 |
CLA 606 A CLA 607 A PHO 608 A CLA 615 A LHG 616 A
CLA 604 B CLA 607 B CLA 611 B CLA 613 B CLA 614 B
BCR 617 B BCR 618 B LMG 620 B UNL 624 B LMG 625 B
SQD 626 B BCR 627 B CLA 504 C CLA 508 C DGD 517 C
DGD 518 C LMG 519 C PHO 401 D CLA 402 D BCR 404 D
LMG 405 D LHG 406 D PL9 407 D LHG 101 L CLA 609 a
BCR 610 a LMG 502 c CLA 503 c CLA 505 c CLA 507 c
CLA 508 c CLA 509 c CLA 511 c CLA 514 c CLA 515 c
BCR 516 c BCR 517 c DGD 518 c UNL 101 i
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28 |
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1.78 |
1.82 |
251.2 |
-0.13 |
0.16 |
13.4 |
80 |
10 |
10 |
14 |
34 |
12 |
5 |
0 |
CLA 609 A LMG 612 A CLA 501 C CLA 502 C CLA 503 C
CLA 505 C CLA 506 C CLA 507 C CLA 508 C CLA 509 C
CLA 510 C CLA 511 C BCR 515 C DGD 516 C BCR 101 K
BCR 101 Y
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29 |
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2.16 |
4.29 |
274.0 |
1.95 |
0.87 |
4.6 |
75 |
10 |
0 |
7 |
61 |
30 |
5 |
0 |
CLA 606 A CLA 607 A PHO 608 A CLA 615 A LHG 616 A
CLA 604 B CLA 607 B CLA 611 B CLA 613 B CLA 614 B
BCR 617 B BCR 618 B LMG 620 B UNL 624 B LMG 625 B
SQD 626 B BCR 627 B CLA 504 C CLA 508 C DGD 517 C
DGD 518 C LMG 519 C CLA 402 D BCR 404 D LMG 405 D
LHG 406 D PL9 407 D LHG 101 L CLA 609 a BCR 610 a
LMG 502 c CLA 503 c CLA 504 c CLA 505 c CLA 506 c
CLA 507 c CLA 508 c CLA 509 c CLA 511 c CLA 512 c
BCR 517 c DGD 518 c DGD 519 c LMG 521 c UNL 101 i
UNL 101 j
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30 |
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1.95 |
1.96 |
344.8 |
0.66 |
0.32 |
8.8 |
76 |
14 |
12 |
11 |
49 |
26 |
8 |
1 |
CLA 606 A CLA 607 A PHO 608 A CLA 615 A LHG 616 A
CLA 604 B CLA 607 B CLA 611 B CLA 613 B CLA 614 B
BCR 617 B BCR 618 B LMG 620 B SQD 626 B BCR 627 B
CLA 504 C CLA 508 C DGD 517 C DGD 518 C LMG 519 C
CLA 402 D BCR 404 D LMG 405 D LHG 406 D PL9 407 D
LHG 101 L BCR 610 a LMG 502 c FME 1 i HEC 201 v
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program