PDBsum entry 5k5c Go to PDB code:  Tunnel analysis for: 5k5c calculated with MOLE 2.0 PDB id 5k5c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.69 33.7 -0.73 -0.27 20.3 87 3 4 1 5 0 0 0  NHE 503 A GLC 1 B 2 1.32 1.73 33.8 -1.14 -0.36 20.9 82 3 3 2 4 0 1 0  NHE 503 A GLC 1 B 3 1.31 1.73 36.6 -1.50 -0.29 25.7 82 4 4 2 6 0 1 0  NHE 503 A GLC 1 B GLC 2 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.