PDBsum entry 5k3d Go to PDB code:  Tunnel analysis for: 5k3d calculated with MOLE 2.0 PDB id 5k3d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.66 3.47 19.3 -1.92 0.05 28.2 80 5 2 1 1 2 0 0   2 1.66 3.48 20.1 -1.89 0.30 27.8 70 5 2 0 1 4 0 0   3 1.32 1.32 16.5 -0.90 0.27 9.0 62 1 1 0 3 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.