PDBsum entry 5k3c Go to PDB code:  Tunnel analysis for: 5k3c calculated with MOLE 2.0 PDB id 5k3c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 2.35 33.9 -1.93 -0.29 22.6 79 7 2 2 2 4 0 0  FTR 142 B FTR 156 B 2 1.32 2.58 38.4 -2.09 -0.07 26.1 79 9 4 0 3 4 1 0  FTR 142 B FTR 156 B 3 1.33 2.31 38.4 -2.19 -0.03 29.6 81 8 3 1 2 3 1 0  FTR 142 B FTR 156 B FTR 185 B CL 401 B 4 1.18 2.13 50.3 -1.30 -0.17 16.9 83 7 2 4 5 5 0 0  FTR 142 A FTR 142 B FTR 156 B 5 1.12 1.17 60.7 -0.87 0.02 14.4 82 9 2 2 11 6 0 0  FTR 142 A FTR 156 A CL 401 A FTR 142 B FTR 156 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.