PDBsum entry 5jpw Go to PDB code:  Tunnel analysis for: 5jpw calculated with MOLE 2.0 PDB id 5jpw Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.45 20.3 1.70 0.55 4.7 75 0 2 0 6 2 0 0   2 1.30 1.30 21.6 0.86 -0.12 2.2 68 0 0 0 5 2 0 1   3 1.28 1.33 21.8 1.26 0.18 5.3 78 2 0 1 6 1 0 1   4 1.41 1.42 26.7 0.12 -0.12 5.5 78 1 0 2 5 3 0 0   5 1.32 1.32 27.1 0.65 -0.20 2.7 73 0 1 1 6 2 0 1   6 1.43 1.43 34.0 -0.10 0.02 8.7 75 1 0 1 6 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.