 |
PDBsum entry 5ivr
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5ivr calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5ivr
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
0 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.11 |
2.11 |
15.2 |
-0.03 |
-0.15 |
16.1 |
85 |
|
2 |
3 |
0 |
3 |
1 |
0 |
0 |
|
6EG 101 B
|
 |
|
2 |
 |
1.64 |
1.64 |
16.1 |
-0.31 |
-0.25 |
15.3 |
83 |
1 |
3 |
0 |
3 |
1 |
1 |
0 |
CL 102 A 6EG 101 B
|
|
3 |
 |
1.75 |
2.32 |
18.5 |
0.79 |
0.17 |
10.0 |
86 |
1 |
2 |
0 |
5 |
1 |
1 |
0 |
CL 102 A 6EG 101 B
|
|
4 |
 |
1.83 |
2.33 |
19.9 |
0.76 |
0.14 |
9.8 |
83 |
1 |
2 |
0 |
6 |
1 |
1 |
0 |
CL 102 A 6EG 101 B
|
|
5 |
 |
1.66 |
1.66 |
20.4 |
-0.23 |
-0.25 |
15.2 |
80 |
1 |
3 |
0 |
4 |
1 |
1 |
0 |
CL 102 A 6EG 101 B
|
|
6 |
 |
1.46 |
1.46 |
23.8 |
0.73 |
0.09 |
10.5 |
83 |
1 |
3 |
0 |
8 |
1 |
1 |
0 |
CL 102 A 6EG 101 B
|
 |
7 |
 |
1.46 |
1.46 |
27.5 |
0.38 |
-0.07 |
12.8 |
88 |
2 |
5 |
0 |
9 |
1 |
0 |
0 |
CL 102 A 6EG 101 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program