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PDBsum entry 5itc

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5itc calculated with MOLE 2.0 PDB id
5itc
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.52 3.57 35.6 1.11 0.69 12.8 76 1 2 1 7 4 1 0  OLC 302 A
2 1.69 1.91 55.0 1.74 0.43 4.3 84 1 2 4 20 2 0 0  OLB 303 A OLB 305 A OLB 306 A OLB 303 B OLC 303 C
3 1.68 1.80 59.6 1.85 0.47 4.0 83 1 2 3 22 1 0 0  OLB 303 A OLB 305 A OLB 306 A OLB 302 C OLB 304 C
4 1.90 1.94 67.1 1.75 0.73 4.8 69 2 2 0 17 7 1 0  OLB 303 A OLB 305 A OLB 306 A
5 1.69 1.81 71.2 2.35 0.67 1.1 84 0 0 5 27 4 0 0  OLC 302 A OLB 303 A OLB 305 A OLB 306 A OLB 303 B
OLC 303 C
6 1.68 1.87 72.0 2.57 1.03 0.8 70 1 0 1 23 9 1 0  OLB 303 A OLB 306 A OLB 303 B OLC 303 C
7 1.67 1.77 75.8 2.50 0.73 1.0 83 0 0 4 29 3 0 0  OLC 302 A OLB 303 A OLB 305 A OLB 306 A OLB 302 C
OLB 304 C
8 1.69 1.93 78.9 2.53 0.76 1.0 83 0 0 4 29 3 0 0  OLB 303 A OLB 305 A OLB 306 A OLB 303 B OLB 302 C
OLC 303 C OLB 304 C
9 1.69 1.81 81.9 2.24 0.90 2.2 71 1 0 1 24 9 1 0  OLC 302 A OLB 303 A OLB 305 A OLB 306 A
10 1.66 1.79 88.5 2.29 0.96 2.3 71 1 0 0 26 8 1 0  OLB 303 A OLB 306 A OLB 302 C OLB 304 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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