PDBsum entry 5iih Go to PDB code:  Tunnel analysis for: 5iih calculated with MOLE 2.0 PDB id 5iih Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.87 2.56 16.6 1.12 0.29 8.5 79 3 1 1 5 0 1 0   2 1.87 2.05 16.8 0.88 0.25 9.6 79 3 1 1 5 0 1 0   3 1.14 1.38 15.7 0.39 0.29 12.6 74 2 0 2 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.