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PDBsum entry 5i2d
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Pore analysis for: 5i2d calculated with  MOLE 2.0
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PDB id
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5i2d
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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30 pores,
coloured by radius |
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30 pores,
coloured by radius
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30 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.38 |
1.69 |
114.2 |
-1.60 |
-0.32 |
26.7 |
82 |
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10 |
15 |
8 |
9 |
3 |
0 |
0 |
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2 |
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2.45 |
2.77 |
114.6 |
-1.52 |
-0.52 |
17.7 |
82 |
11 |
6 |
8 |
8 |
1 |
6 |
0 |
DA -3 I DG -2 I DT 2 I DC 3 I DA 4 I DA -2 J DG -
1 J
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3 |
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1.84 |
3.75 |
116.9 |
-1.65 |
-0.51 |
19.7 |
83 |
8 |
8 |
9 |
6 |
2 |
5 |
0 |
DC 3 I DA 4 I
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4 |
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1.30 |
1.56 |
123.2 |
-1.87 |
-0.37 |
28.9 |
82 |
15 |
13 |
2 |
8 |
2 |
4 |
0 |
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5 |
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1.32 |
1.57 |
131.7 |
-0.92 |
-0.16 |
20.7 |
82 |
9 |
14 |
8 |
14 |
2 |
3 |
0 |
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6 |
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1.59 |
1.59 |
141.2 |
-2.33 |
-0.51 |
30.8 |
83 |
25 |
10 |
5 |
6 |
1 |
1 |
0 |
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7 |
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1.42 |
1.50 |
152.6 |
-1.63 |
-0.47 |
20.7 |
81 |
19 |
11 |
6 |
8 |
3 |
5 |
0 |
DG -4 I DA -3 I DG -2 I DC -1 I DC -6 J
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8 |
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1.52 |
1.79 |
155.1 |
-1.24 |
-0.33 |
21.7 |
81 |
8 |
15 |
12 |
13 |
3 |
3 |
0 |
DC 3 I DA 4 I
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9 |
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1.89 |
3.55 |
154.4 |
-2.23 |
-0.55 |
30.5 |
83 |
15 |
23 |
5 |
7 |
3 |
2 |
0 |
DG 1 T DT 2 T DC 3 T DT -8 U DC -7 U
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10 |
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1.46 |
1.61 |
164.1 |
-1.41 |
-0.37 |
22.4 |
82 |
13 |
12 |
6 |
12 |
1 |
7 |
0 |
DC 3 I DA 4 I
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11 |
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1.91 |
2.94 |
168.0 |
-2.31 |
-0.58 |
29.4 |
78 |
18 |
21 |
3 |
6 |
2 |
3 |
0 |
DG 5 J
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12 |
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1.35 |
1.36 |
173.0 |
-1.85 |
-0.47 |
21.7 |
79 |
17 |
14 |
9 |
12 |
4 |
8 |
0 |
DA -3 T DG -2 T DG 5 U DG 6 U DT 7 U
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13 |
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1.75 |
1.99 |
172.9 |
-1.30 |
-0.43 |
19.9 |
82 |
12 |
14 |
8 |
12 |
2 |
4 |
0 |
DA -3 I DG -2 I DC -
1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DT -4 J
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14 |
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1.46 |
1.63 |
171.9 |
-1.67 |
-0.40 |
25.7 |
83 |
14 |
22 |
5 |
12 |
2 |
5 |
0 |
DG 1 T DT 2 T DC 3 T DT -8 U DC -7 U
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15 |
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1.53 |
1.59 |
177.2 |
-2.03 |
-0.55 |
27.0 |
80 |
20 |
18 |
5 |
9 |
2 |
4 |
0 |
DA -3 I DG -2 I DG 5 J DG 6 J DT 7 J
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16 |
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1.57 |
1.57 |
179.5 |
-1.91 |
-0.62 |
21.1 |
83 |
18 |
10 |
12 |
8 |
2 |
3 |
1 |
DG -16 I DC -15 I DC -14 I DG -
1 J DT 0 J DC 1 J DG 2 J DA 3 J DG 4 J DG 5 J DG
6 J DG 20 J DG 21 J DA 22 J C 2 K G 3 K A 4 K
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17 |
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1.35 |
1.63 |
181.9 |
-1.36 |
-0.46 |
19.5 |
83 |
17 |
11 |
2 |
12 |
0 |
8 |
0 |
DA -3 I DG -2 I DC -
1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DT -4 J
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18 |
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2.11 |
2.31 |
189.0 |
-2.25 |
-0.60 |
29.3 |
80 |
24 |
22 |
6 |
7 |
0 |
2 |
1 |
DG -16 I DC -15 I DC -14 I DG 20 J DG 21 J DA 22 J
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19 |
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2.37 |
2.39 |
188.4 |
-1.66 |
-0.58 |
19.6 |
76 |
13 |
9 |
4 |
4 |
3 |
2 |
1 |
DG -19 I DT -18 I DG -16 I DC -15 I DC -14 I DA -
9 I DA -8 I DT -
7 I DA 11 J DC 13 J DG 14 J DG 20 J DG 21 J DA 22
J DC 23 J
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20 |
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1.53 |
1.67 |
199.5 |
-1.61 |
-0.47 |
19.2 |
80 |
19 |
12 |
12 |
10 |
3 |
10 |
0 |
DC -1 I DT 2 I DC 3 I DA 4 I DC -6 J DG -5 J DT -
4 J DG -3 J DA -2 J DG -1 J
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21 |
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1.62 |
1.61 |
198.1 |
-2.26 |
-0.64 |
26.5 |
82 |
19 |
19 |
10 |
7 |
3 |
4 |
0 |
DG -
1 J DT 0 J DC 1 J DG 2 J DA 3 J DG 4 J DG 5 J DG
6 J C 2 K G 3 K A 4 K
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22 |
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2.24 |
2.24 |
195.3 |
-1.86 |
-0.53 |
25.8 |
82 |
13 |
23 |
9 |
12 |
3 |
5 |
0 |
DC 3 I DA 4 I DG 1 T DT 2 T DC 3 T DT -8 U DC -7 U
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23 |
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2.72 |
2.72 |
213.1 |
-1.78 |
-0.57 |
23.6 |
83 |
17 |
22 |
5 |
10 |
2 |
6 |
0 |
DA -3 I DG -2 I DC -
1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DT -4 J DG 1 T DT 2 T DC 3 T DT -8 U DC -7 U
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24 |
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1.45 |
1.56 |
232.8 |
-1.64 |
-0.45 |
23.2 |
81 |
19 |
24 |
12 |
17 |
3 |
8 |
0 |
DC -1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DT -4 J DG 5 J DG 6 J DT 7 J
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25 |
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1.44 |
1.76 |
239.1 |
-1.55 |
-0.42 |
21.1 |
80 |
20 |
21 |
14 |
13 |
4 |
8 |
0 |
DC -1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DG -5 J DT -4 J
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26 |
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1.47 |
1.59 |
241.8 |
-1.73 |
-0.46 |
23.8 |
80 |
24 |
21 |
6 |
15 |
3 |
12 |
0 |
DC -1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DT -4 J DG 5 J DG 6 J DT 7 J
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27 |
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1.40 |
1.72 |
248.1 |
-1.67 |
-0.43 |
21.8 |
80 |
25 |
18 |
8 |
12 |
3 |
12 |
0 |
DC -1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DG -5 J DT -4 J
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28 |
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1.67 |
1.69 |
268.4 |
-1.60 |
-0.47 |
22.1 |
80 |
23 |
23 |
14 |
16 |
3 |
7 |
1 |
DG -16 I DC -15 I DC -14 I DC -
1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DT -
4 J DG 5 J DG 6 J DT 7 J DG 20 J DG 21 J DA 22 J
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29 |
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2.35 |
2.35 |
271.1 |
-1.89 |
-0.61 |
23.8 |
76 |
16 |
15 |
3 |
7 |
2 |
4 |
1 |
DG -19 I DT -18 I DG -16 I DC -15 I DC -
14 I DG 14 J DG 20 J DG 21 J DA 22 J DC 23 J
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30 |
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1.45 |
1.55 |
277.4 |
-1.66 |
-0.48 |
21.7 |
80 |
28 |
20 |
8 |
15 |
1 |
11 |
1 |
DG -16 I DC -15 I DC -14 I DC -
1 I DT 0 I DG 1 I DT 2 I DC 3 I DC -7 J DC -
6 J DT -
4 J DG 5 J DG 6 J DT 7 J DG 20 J DG 21 J DA 22 J
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program