PDBsum entry 5i1v Go to PDB code:  Tunnel analysis for: 5i1v calculated with MOLE 2.0 PDB id 5i1v Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.51 65.0 -0.28 -0.10 10.3 80 5 2 3 6 4 3 2  FAD 600 A 2 1.33 1.54 82.5 -0.78 -0.25 13.9 85 7 1 7 9 5 0 2  FAD 600 A 3 1.52 1.69 24.0 -1.10 -0.22 10.7 74 2 2 0 2 3 2 0   4 1.43 1.45 22.9 -0.61 -0.36 7.3 75 1 2 0 2 1 3 0   5 1.42 1.44 23.5 -0.70 -0.34 7.7 73 1 2 0 2 2 3 0   6 1.14 3.11 16.0 -1.15 0.01 17.5 88 2 1 2 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.