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PDBsum entry 5hg9

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Transferase/transferase inhibitor PDB id
5hg9
Contents
Protein chain
280 a.a.
Ligands
63A
SO4 ×2
GOL ×3
Waters ×136

References listed in PDB file
Key reference
Title Discovery of 1-{(3r,4r)-3-[({5-Chloro-2-[(1-Methyl-1h-Pyrazol-4-Yl)amino]-7h-Pyrrolo[2,3-D]pyrimidin-4-Yl}oxy)methyl]-4-Methoxypyrrolidin-1-Yl}prop-2-En-1-One (pf-06459988), A potent, Wt sparing, Irreversible inhibitor of t790m-Containing egfr mutants.
Authors H.Cheng, S.K.Nair, B.W.Murray, C.Almaden, S.Bailey, S.Baxi, D.Behenna, S.Cho-Schultz, D.Dalvie, D.M.Dinh, M.P.Edwards, J.L.Feng, R.A.Ferre, K.S.Gajiwala, M.D.Hemkens, A.Jackson-Fisher, M.Jalaie, T.O.Johnson, R.S.Kania, S.Kephart, J.Lafontaine, B.Lunney, K.K.Liu, Z.Liu, J.Matthews, A.Nagata, S.Niessen, M.A.Ornelas, S.T.Orr, M.Pairish, S.Planken, S.Ren, D.Richter, K.Ryan, N.Sach, H.Shen, T.Smeal, J.Solowiej, S.Sutton, K.Tran, E.Tseng, W.Vernier, M.Walls, S.Wang, S.L.Weinrich, S.Xin, H.Xu, M.J.Yin, M.Zientek, R.Zhou, J.C.Kath.
Ref. J Med Chem, 2016, 59, 2005-2024. [DOI no: 10.1021/acs.jmedchem.5b01633]
PubMed id 26756222
Abstract
First generation EGFR TKIs (gefitinib, erlotinib) provide significant clinical benefit for NSCLC cancer patients with oncogenic EGFR mutations. Ultimately, these patients' disease progresses, often driven by a second-site mutation in the EGFR kinase domain (T790M). Another liability of the first generation drugs is severe adverse events driven by inhibition of WT EGFR. As such, our goal was to develop a highly potent irreversible inhibitor with the largest selectivity ratio between the drug-resistant double mutants (L858R/T790M, Del/T790M) and WT EGFR. A unique approach to develop covalent inhibitors, optimization of reversible binding affinity, served as a cornerstone of this effort. PF-06459988 was discovered as a novel, third generation irreversible inhibitor, which demonstrates (i) high potency and specificity to the T790M-containing double mutant EGFRs, (ii) minimal intrinsic chemical reactivity of the electrophilic warhead, (iii) greatly reduced proteome reactivity relative to earlier irreversible EGFR inhibitors, and (iv) minimal activity against WT EGFR.
PROCHECK
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