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PDBsum entry 5hdh
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Tunnel analysis for: 5hdh calculated with  MOLE 2.0
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PDB id
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5hdh
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.47 |
27.5 |
-0.01 |
0.20 |
13.0 |
84 |
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1 |
3 |
2 |
6 |
1 |
0 |
2 |
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NAG 1 C NAG 1 D NAG 2 D
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2 |
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1.36 |
1.57 |
25.0 |
2.01 |
0.75 |
2.3 |
56 |
1 |
0 |
0 |
7 |
3 |
0 |
0 |
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3 |
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1.37 |
1.56 |
26.2 |
2.00 |
0.53 |
2.5 |
62 |
1 |
0 |
1 |
7 |
2 |
0 |
0 |
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4 |
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1.27 |
1.44 |
32.2 |
1.49 |
0.45 |
2.7 |
68 |
1 |
0 |
3 |
9 |
3 |
0 |
0 |
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5 |
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1.32 |
1.55 |
38.1 |
2.31 |
0.93 |
1.3 |
62 |
0 |
1 |
0 |
12 |
4 |
0 |
0 |
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6 |
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1.37 |
1.37 |
15.9 |
0.96 |
0.12 |
3.6 |
83 |
1 |
0 |
2 |
3 |
1 |
0 |
0 |
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7 |
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1.13 |
1.13 |
21.8 |
-0.22 |
-0.10 |
10.1 |
74 |
3 |
0 |
2 |
2 |
3 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program