PDBsum entry 5gyn Go to PDB code:  Tunnel analysis for: 5gyn calculated with MOLE 2.0 PDB id 5gyn Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.82 1.82 15.3 -2.32 -0.60 29.2 88 3 5 2 1 0 1 0  MG 301 A 2 1.86 1.96 15.9 -1.70 0.05 21.6 84 2 2 1 1 1 0 0   3 1.83 1.97 18.2 -2.19 -0.10 28.9 82 4 2 1 1 1 0 0   4 1.89 2.20 18.2 -2.14 -0.33 29.1 85 3 4 3 1 1 0 0   5 1.92 2.19 19.8 -2.45 -0.37 32.5 86 5 3 3 1 1 0 0   6 1.64 1.82 20.1 -1.29 0.09 22.3 71 3 1 2 2 2 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.