PDBsum entry 5fdq Go to PDB code:  Pore analysis for: 5fdq calculated with MOLE 2.0 PDB id 5fdq Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.58 2.89 28.7 -0.80 -0.13 13.3 79 3 0 3 1 3 1 0   2 1.61 1.61 34.4 -2.04 -0.64 6.8 72 4 0 5 0 3 2 0   3 1.17 1.23 39.9 -1.18 -0.46 12.3 77 3 3 5 2 2 2 1   4 1.15 1.16 43.0 -1.23 -0.30 14.1 83 3 3 2 2 1 1 0   5 1.28 1.27 45.2 -1.05 -0.30 10.2 78 4 1 7 2 4 1 1   6 1.45 1.45 49.4 -1.08 -0.39 11.9 77 4 2 4 2 2 1 2   7 1.22 1.43 59.9 -1.91 -0.51 7.7 72 4 1 6 1 3 3 0   8 1.53 5.04 103.7 -0.94 -0.03 16.7 76 7 7 5 8 9 0 0  NAG 1 D NAG 2 D NAG 1 E NAG 2 E 9 2.20 2.45 107.7 -1.86 -0.38 20.7 82 7 2 5 2 2 1 0   10 1.31 1.28 130.3 -1.52 -0.41 14.5 80 7 3 8 3 2 3 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.