PDBsum entry 5ej1 Go to PDB code:  Tunnel analysis for: 5ej1 calculated with MOLE 2.0 PDB id 5ej1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.39 33.2 -0.99 -0.28 12.5 77 4 1 1 5 0 5 0   2 1.18 1.46 35.5 -0.37 -0.14 9.4 75 2 1 1 8 0 5 0   3 1.19 1.38 43.1 -0.84 -0.50 8.2 79 3 1 4 6 1 4 0   4 1.18 2.19 62.5 0.26 0.38 14.2 73 4 5 0 11 5 1 0  BGC 7 C BGC 8 C BGC 9 C BGC 10 C BGC 11 C BGC 12 C BGC 13 C 5 1.23 1.39 67.8 -0.63 -0.26 13.2 79 6 4 3 12 0 7 0   6 1.18 2.18 148.2 -0.17 -0.03 11.5 77 9 8 8 24 12 4 1  BGC 7 C BGC 8 C BGC 9 C BGC 10 C BGC 11 C BGC 12 C BGC 13 C BGC 14 C BGC 15 C 7 1.22 2.18 29.4 1.55 0.41 3.7 75 1 1 1 11 0 3 0   8 1.09 2.88 30.1 2.39 0.72 4.2 72 1 1 0 9 0 2 0   9 1.16 1.94 30.5 1.07 0.32 3.9 75 1 2 0 9 0 3 0   10 1.14 2.25 30.3 2.83 0.83 0.9 84 0 0 0 13 1 1 0   11 1.12 2.27 31.0 3.06 0.90 0.8 83 0 0 0 12 1 1 0   12 1.51 1.66 24.1 1.05 0.20 1.7 72 0 0 1 6 0 1 0  UNK 171 D UNK 172 D UNK 173 D UNK 176 D 13 1.30 1.30 16.5 -1.54 -0.77 16.3 94 2 3 2 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.