PDBsum entry 5ecm Go to PDB code:  Tunnel analysis for: 5ecm calculated with MOLE 2.0 PDB id 5ecm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.36 35.3 0.66 0.37 10.4 81 2 3 1 6 4 0 0   2 1.15 1.16 39.8 -0.02 -0.10 9.7 83 3 2 3 7 2 2 0   3 1.15 1.16 39.8 -0.02 -0.10 9.7 83 3 2 3 7 2 2 0   4 1.20 1.85 18.5 1.68 0.84 11.2 71 2 0 0 5 3 0 0   5 1.19 1.87 25.0 2.37 0.97 6.1 69 1 0 1 8 4 0 0   6 1.24 1.40 19.5 2.37 0.78 0.8 71 0 0 0 6 3 1 0   7 1.15 1.78 18.8 1.52 0.66 2.7 77 0 1 1 3 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.