PDBsum entry 5e6c Go to PDB code:  Tunnel analysis for: 5e6c calculated with MOLE 2.0 PDB id 5e6c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.21 21.6 -1.46 -0.42 15.5 75 4 0 1 1 1 1 0  DG 5 D DG 6 D DA 7 D DA 8 D 2 1.23 1.24 22.7 -1.47 -0.60 18.7 80 5 0 0 1 0 0 0  DC 13 C DA 14 C DC 15 C DG 5 D DG 6 D DA 7 D DA 8 D 3 1.23 1.24 25.7 -1.67 -0.41 18.0 79 5 0 1 1 1 1 0  DC 13 C DA 14 C DG 6 D DA 7 D DA 8 D 4 1.19 1.50 21.5 0.24 -0.14 9.1 75 1 1 1 3 0 0 4   5 1.14 1.45 24.7 -0.24 -0.21 12.8 79 2 1 1 3 0 0 3   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.