PDBsum entry 5e2z

Pore analysis for: 5e2z calculated with

MOLE 2.0

PDB id

5e2z

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.31

1.67

36.0

-1.03

-0.40

13.0

78

2

3

3

1

2

0

1

2

1.19

3.40

47.6

-0.17

0.18

22.1

79

5

7

1

10

1

0

0

3

1.94

2.16

54.1

-2.75

-0.41

38.5

76

10

9

1

2

3

2

0

4

2.69

3.79

78.9

-0.89

-0.29

12.9

90

5

6

8

7

1

0

0

5

1.01

1.57

107.6

-0.40

-0.03

9.1

82

5

3

5

7

4

1

0

FUC 4 I

6

1.34

2.22

128.6

-0.91

-0.15

18.9

79

9

8

8

10

2

2

2

7

2.22

2.22

133.6

-1.08

-0.36

13.4

89

6

7

10

7

1

1

0

GAL 1 H SIA 2 H

8

1.37

3.61

145.6

-1.41

-0.42

18.8

86

8

8

8

7

0

0

0

9

1.32

2.21

156.1

-1.95

-0.37

30.5

81

15

16

6

12

1

0

0

10

1.20

2.55

160.4

-0.83

-0.20

16.9

88

9

10

10

17

2

1

0

11

1.46

2.41

227.9

-2.14

-0.44

29.0

80

21

22

10

10

4

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.