PDBsum entry 5dyt Go to PDB code:  Tunnel analysis for: 5dyt calculated with MOLE 2.0 PDB id 5dyt Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.59 16.8 -2.15 -0.45 28.8 70 3 3 0 1 3 0 0   2 1.33 1.67 16.2 0.90 0.21 6.4 82 1 1 2 4 1 0 0  NAG 1 G NAG 2 G FUC 3 G 3 1.16 1.50 16.4 -0.90 0.01 16.5 71 3 1 1 2 2 1 0  PEG 617 B 4 1.15 3.40 17.0 -0.49 0.39 4.3 77 2 0 2 3 2 0 0  GOL 606 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.