PDBsum entry 5dw3 Go to PDB code:  Tunnel analysis for: 5dw3 calculated with MOLE 2.0 PDB id 5dw3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.57 1.62 29.9 -1.56 -0.52 19.2 86 4 2 3 4 0 1 0  LLP 82 B TRP 402 B 2 1.46 1.61 33.3 -1.40 -0.54 17.0 89 3 3 4 4 0 1 0  LLP 82 B TRP 402 B 3 1.31 1.51 38.0 0.52 0.21 9.7 84 3 1 5 8 2 2 0  LLP 82 B TRP 402 B 4 1.38 1.60 91.9 -0.37 -0.08 15.1 85 9 3 6 18 2 2 0  LLP 82 A TRP 402 A LLP 82 B 5 1.52 2.34 16.1 -1.03 0.08 22.2 69 2 2 0 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.