PDBsum entry 5dot

Pore analysis for: 5dot calculated with

MOLE 2.0

PDB id

5dot

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

14 pores, coloured by radius

16 pores, coloured by radius

16 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.26

1.52

31.5

-0.53

-0.43

14.5

88

2

2

2

5

0

1

0

2

2.17

2.30

32.5

-1.03

-0.16

18.7

85

6

2

3

6

1

3

0

3

1.88

1.88

37.0

-2.34

-0.42

24.9

74

3

3

1

0

2

0

0

4

1.12

1.30

37.7

-1.78

-0.45

9.8

76

3

2

4

2

2

3

0

5

1.74

3.48

41.7

-2.52

-0.34

29.9

75

5

4

0

0

2

0

0

6

1.15

1.36

44.7

-1.51

-0.27

18.1

74

7

3

3

3

6

0

0

7

1.19

2.12

45.1

-1.58

-0.45

12.7

82

4

2

4

5

2

2

0

8

1.77

2.25

46.3

-2.81

-0.59

28.6

78

8

7

6

1

3

2

0

9

1.68

1.96

48.6

-2.68

-0.56

29.1

77

11

6

5

2

2

2

0

10

1.87

2.01

52.8

-1.09

-0.28

20.3

82

6

5

4

8

3

4

0

11

2.26

2.41

74.1

-1.86

-0.32

25.2

80

11

8

8

6

5

4

0

12

1.48

1.92

90.2

-1.98

-0.43

26.9

81

15

9

8

10

4

3

0

13

2.74

3.22

93.6

-1.52

-0.51

19.1

85

5

8

6

10

2

6

0

14

1.89

2.01

123.6

-1.34

-0.46

20.8

85

9

10

6

14

3

4

0

15

1.52

1.44

185.7

-1.45

-0.52

19.8

81

8

12

10

10

4

9

0

16

1.47

1.55

196.0

-1.61

-0.41

21.6

80

14

14

14

12

9

6

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.