PDBsum entry 5dnx Go to PDB code:  Tunnel analysis for: 5dnx calculated with MOLE 2.0 PDB id 5dnx Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 2.26 15.3 2.92 0.76 0.9 95 0 0 0 9 0 0 0   2 1.16 2.23 17.4 2.72 0.80 5.9 92 1 1 0 9 0 0 0   3 1.12 1.84 16.5 3.17 0.90 0.8 93 0 0 1 9 0 0 0   4 1.17 1.24 18.8 -0.94 -0.18 17.9 75 3 0 1 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.