PDBsum entry 5dnn Go to PDB code:  Tunnel analysis for: 5dnn calculated with MOLE 2.0 PDB id 5dnn Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.50 39.5 0.12 -0.05 9.6 82 4 0 1 8 1 1 0  DC -13 I DA -12 I DT -11 I DT 16 J DT 17 J 2 1.15 1.51 40.5 1.01 0.16 6.1 86 3 0 0 9 0 1 0  DC -13 I DA -12 I DT -11 I DC 15 J DT 16 J DT 17 J 3 1.20 1.47 59.8 -0.22 -0.24 12.1 85 4 1 1 8 0 1 0  DA -16 I DG -15 I DG -14 I DC -13 I DG 60 I DG - 55 J DT 16 J DT 17 J DT 18 J DT 19 J 4 1.22 1.49 82.1 0.24 -0.22 6.9 85 2 0 0 8 0 1 0  DA -19 I DA -18 I DA -17 I DA -16 I DG -15 I DG - 14 I DC - 13 I DG 60 I DG 61 I DT 16 J DT 17 J DT 18 J DT 19 J DG 20 J DA 21 J DT 22 J 5 1.85 1.85 20.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DA -1 I DA 0 I DT 1 I DC 2 I DT 1 J DC 2 J Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.