PDBsum entry 5djc Go to PDB code:  Tunnel analysis for: 5djc calculated with MOLE 2.0 PDB id 5djc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.48 17.4 -1.85 -0.57 22.4 83 3 1 2 0 2 0 0   2 1.32 1.43 22.7 -2.31 -0.71 20.8 84 4 2 3 0 1 0 0   3 1.34 1.45 25.2 -2.55 -0.67 28.2 81 6 4 4 0 2 1 0   4 1.33 1.42 33.5 -1.31 -0.61 18.9 85 6 4 3 2 1 0 0   5 1.49 1.49 15.2 -0.85 -0.16 17.3 65 0 2 0 2 1 1 0   6 1.18 3.12 24.6 -0.72 -0.37 18.4 84 1 3 3 3 2 0 0   7 1.27 1.50 15.4 -2.17 -0.81 23.4 86 2 2 3 0 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.