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PDBsum entry 5df0
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Tunnel analysis for: 5df0 calculated with  MOLE 2.0
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PDB id
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5df0
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.34 |
1.56 |
15.0 |
-0.46 |
-0.28 |
12.6 |
68 |
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1 |
1 |
0 |
3 |
1 |
0 |
0 |
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2 |
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1.22 |
1.74 |
20.1 |
-1.82 |
-0.31 |
15.4 |
71 |
2 |
2 |
2 |
0 |
2 |
1 |
0 |
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3 |
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1.22 |
1.61 |
23.0 |
-1.41 |
-0.72 |
14.5 |
91 |
3 |
1 |
4 |
2 |
0 |
1 |
0 |
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4 |
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1.21 |
1.80 |
23.1 |
-1.45 |
-0.62 |
17.4 |
86 |
3 |
2 |
3 |
3 |
0 |
1 |
0 |
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5 |
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1.21 |
1.61 |
28.5 |
-1.51 |
-0.77 |
12.0 |
81 |
2 |
4 |
2 |
1 |
0 |
1 |
0 |
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6 |
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1.55 |
3.01 |
20.8 |
-1.21 |
0.63 |
16.3 |
69 |
2 |
3 |
0 |
3 |
6 |
0 |
0 |
NAG 601 B SN5 604 B 58Y 605 B
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7 |
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1.55 |
3.01 |
21.6 |
-1.45 |
0.57 |
17.5 |
65 |
1 |
3 |
0 |
2 |
6 |
0 |
0 |
NAG 601 B SN5 604 B 58Y 605 B
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8 |
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1.16 |
1.60 |
16.0 |
-1.40 |
-0.09 |
26.9 |
72 |
2 |
1 |
0 |
2 |
3 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program