PDBsum entry 5d8s Go to PDB code:  Pore analysis for: 5d8s calculated with MOLE 2.0 PDB id 5d8s Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 pore, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.67 1.81 51.3 0.84 0.54 8.7 80 3 2 2 8 2 0 0  HEM 201 D 2 1.36 1.43 57.3 0.69 0.43 9.1 80 3 3 3 9 2 0 0  HEM 201 D 3 1.36 1.43 60.2 0.03 -0.13 6.5 79 1 3 6 6 0 0 0   4 1.35 1.44 80.3 -0.74 -0.07 22.2 80 6 11 3 8 2 0 0  HEM 201 D 5 1.47 1.53 131.0 -0.78 0.02 21.0 80 8 13 5 11 3 0 0  HEM 201 D 6 1.24 1.37 30.2 1.38 0.68 3.1 80 1 1 2 8 2 0 0  HEM 202 A 7 1.39 1.44 30.9 1.35 0.66 3.3 77 1 1 2 10 2 0 0  HEM 202 C 8 1.42 1.52 29.1 1.22 0.56 2.3 85 1 0 3 8 2 0 0  HEM 201 F 9 1.32 1.39 72.3 -0.81 -0.03 18.8 81 5 7 5 7 3 0 0  HEM 201 E Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.